R Tutorials

SCOPEINR · R PKGDOWN ARTICLES

R Tutorials

Twelve rendered R vignettes, grouped by theme: getting started and the input structure, energy balance and fluorescence, LUTs and large-scale runs, then sensitivity, inversion and a real-Sentinel-2 capstone. Every number and figure is real output from an actual run.

Getting started & the input structure · t00–t02
SCOPE's options table, a first run, and the soil/canopy/BRDF input structure underneath it.
00

SCOPE's Options Table

Every switch that changes what a run computes.
01

Getting Started with SCOPEinR

A first coupled simulation, start to finish.
02

Soil, Canopy BRDF, and the SCOPE Input Structure

What every input table actually feeds.
Energy balance & fluorescence · t03–t04
The two things that make SCOPE more than a reflectance model.
03

Energy Balance Basics

Leaf/soil temperature and stomatal conductance, converged.
04

Fluorescence (SIF)

Where the emitted SIF spectrum comes from.
LUTs & large-scale runs · t05–t06, t10
Building a SCOPE parameter table and running it at scale.
05

Building SCOPE LUTs

SCOPE-specific parameter sampling.
06

Large-Scale and Parallel SCOPE Runs

A LUT run across many cores.
10

End-to-End SCOPE Pipeline

LUT to output, as one pipeline.
Sensitivity, inversion & the real-Sentinel-2 capstone · t07–t09, t11
Which traits move SCOPE's signal, whether SIF adds information, and a real satellite scene.
07

Sensitivity: Direct vs. Indirect Trait Effects

Reflectance sensitivity to Vcmax25.
08

Hybrid Inversion from SCOPE Reflectance

Retrieving traits from SCOPE-simulated reflectance.
09

Does SIF Add Information About Photosynthesis?

Testing SIF as a GPP proxy.
11

Capstone: ML Inversion of Net Photosynthesis, Real Sentinel-2

Real Sentinel-2 imagery over Speulderbos.
The full package reference (every function, every argument) lives at the SCOPEinR pkgdown site; the complete numbered tutorial index is on the RTM-Suite tutorials overview.